JSEA  Vol.2 No.3 , October 2009
MicrobIdentifier: A Microbial Identification Software Based on Mass-Spectrometry
ABSTRACT
As the technology of microbial identification by mass cataloging has been widely used, we have developed the micro-bial identification software, MicrobIdentifier, which integrates and automates different steps in the procedure of rapid species identification based on mass-spectrometry. This software is written in Java for cross-platform intention.

Cite this paper
nullF. LIU, L. LI, C. ZHANG, L. WANG and P. LI, "MicrobIdentifier: A Microbial Identification Software Based on Mass-Spectrometry," Journal of Software Engineering and Applications, Vol. 2 No. 3, 2009, pp. 206-208. doi: 10.4236/jsea.2009.23028.
References
[1]   G. W. Jackson, R. J. McNichols, G. E. Fox and R. C. Willson, “Bacterial genotyping by 16S rRNA mass cata-loging”, BMC Bioinformatics, vol.7, pp. 321–335, June 2006.

[2]   Z. D. Zhang, G. W. Jackson, G. E. Fox, and R. C. Willson, “Microbial identification by mass cataloging,” BMC Bio-informatics, Vol. 7, pp. 117–135, Match 2006.

[3]   J. D. Thompson, D. G. Higgins, and T. J. Gibson, “CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice,” Nucleic Acids Research, Vol. 22, pp. 4673–4680, Sep-tember 1994.

[4]   C. Honisch, Y. Chen, C. Mortimer, C. Arnold, O. Schmidt, D. van den Boom, C. R. Cantor, H. N. Shah, and S. E. Gharbia, “Automated comparative sequence analysis by base-specific cleavage and mass spectrometry for nucleic acid-based microbial typing,” Proceedings of the National Academy of Sciences, Vol. 104, pp. 10649–10654, June 2007.

[5]   H. Steen and M. Mann, “The abc’s (and xyz’s) of Peptide Sequencing,” Molecular Cell Biology, Vol. 5, pp. 699– 711, September 2004.

 
 
Top