[1] D. S. D. Larsson, Y. Wang and D. van der Spoel, Biochemistry, Vol. 48, 2009, pp. 1006-1015.
http://dx.doi.org/10.1021/bi801952f
[2] E. G. Marklund, D. S. D. Larsson, D. van der Spoel, A. Patriksson and C. Caleman, Physical Chemistry Chemical Physics, Vol. 11, 2009, pp. 8069-8078.
http://dx.doi.org/10.1039/b903846a
[3] R. Friemann, D. S. D. Larsson, Y. Wang and D. van der Spoel, Journal of the American Chemical Society, Vol. 131, 2009, pp. 16606-16607.
http://dx.doi.org/10.1021/ja902962y
[4] D. van der Spoel, E. Marklund, D. S. D. Larsson and C. Caleman, Macromolecular Bioscience, Vol. 11, 2011, pp. 50-59. http://dx.doi.org/10.1002/mabi.201000291
[5] Kh. Kholmurodov, “Molecular Simulation Studies in Material and Biological Sciences,” Nova Science Publishers Ltd., 2007, 196 p.
[6] Kh. Kholmurodov, “Molecular Simulation in Material and Biological Research,” Nova Science Publishers Ltd., 2009, 155 p.
[7] Kh. Kholmurodov, “Molecular Dynamics of Nanobistructures,” Nova Science Publishers Ltd., 2011, 210 p.
[8] Kh. Kholmurodov, “Models in Bioscience and Materials Research: Molecular Dynamics and Related Techniques,” Book of International Workshop MSSMBS’12, Nova Science Publishers Ltd., 2013, 208 p.
[9] J. Santa Lucia Jr. and D. Hicks, Annual Review of Biophysics and Biomolecular Structure, Vol. 33, 2004, pp. 415-440.
http://dx.doi.org/10.1146/annurev.biophys.32.110601.141800
[10] K. J. Breslauert, R. Franks, H. Blockers and L. A. Markyt, Proceedings of the National Academy of Sciences of the United States of America, Vol. 83, 1986, pp. 3746-3750.
http://dx.doi.org/10.1073/pnas.83.11.3746
[11] V. Freyre-Fonseca, et al., Toxicology Letters, Vol. 202, 2011, pp. 111-119.
http://dx.doi.org/10.1016/j.toxlet.2011.01.025
[12] B. Trouiller, R. Reliene, A. Westbrook, P. Solaimani and R. H. Schiestl, Cancer Research, Vol. 69, 2009, pp. 8784-8789. http://dx.doi.org/10.1158/0008-5472.CAN-09-2496
[13] Q. Saquib, A. A. Al-Khedhairy, M. A. Siddiqui, F. M. Abou-Tarboush, A. Azam and J. Musarrat, Toxicology in Vitro, Vol. 26, 2012, pp. 351-361.
http://dx.doi.org/10.1016/j.tiv.2011.12.011
[14] R. Dunford, A. Salinaro, L. Cai, N. Serpone, S. Horikoshi, H. Hidaka and J. Knowland, FEBS Letters, Vol. 418, 1997, pp. 87-90.
http://dx.doi.org/10.1016/S0014-5793(97)01356-2
[15] C. Srinivasan, Current Science, Vol. 94, 2008, pp. 300-301.
[16] T. A. Hilder and J. M. Hill, Current Applied Physics, Vol. 8, 2008, pp. 258-261.
http://dx.doi.org/10.1016/j.cap.2007.10.011
[17] T. A. Hilder and J. M. Hill, Micro & Nano Letters, Vol. 3, 2008, pp. 41-49. http://dx.doi.org/10.1049/mnl:20080008
[18] Q. Chen, Q. Wang, Y. C. Liu, T. Wu, Y. Kang, J. D. Moore and K. G. Gubbins, Journal of Chemical Physics, Vol. 131, 2009, Article ID: 015101.
[19] I. Ali, D. Marenduzzo and J. M. Yeomans, Physical Review Letters, Vol. 96, 2006, Article ID: 208102.
http://dx.doi.org/10.1103/PhysRevLett.96.208102
[20] I. Ali, D. Marenduzzo and J. M. Yeomans, Biophysical Journal, Vol. 94, 2008, pp. 4159-4164.
http://dx.doi.org/10.1529/biophysj.107.111963
[21] J. V. Veetil and K. Ye, Biotechnology Progress, Vol. 23, 2007, pp. 517-531. http://dx.doi.org/10.1021/bp0602395
[22] S. Dhar, Z. Liu, J. Thomale, H. J. Dai and S. J. Lippard, Journal of the American Chemical Society, Vol. 130, 2008, pp. 11467-11476.
http://dx.doi.org/10.1021/ja803036e
[23] J. Tersoff, Physical Review B, Vol. 39, 1989, pp. 5566-5568. http://dx.doi.org/10.1103/PhysRevB.39.5566
[24] Kh. Kholmurodov, G. Aru and K. Yasuoka, Natural Science, Vol. 2, 2010, pp. 902-910.
http://dx.doi.org/10.4236/ns.2010.28111
[25] Kh. Kholmurodov, et al., Chemical Physics, Vol. 402, 2012, pp. 41-47.
http://dx.doi.org/10.1016/j.chemphys.2012.04.002
[26] K. A. Affholter, S. J. Henderson, G. D. Wignall, G. J. Bunick, R. E. Haufler and R. N. Compton, The Journal of Chemical Physics, Vol. 99, 1993, pp. 9224-9229.
http://dx.doi.org/10.1063/1.465538
[27] Y. B. Melnichenko, G. D. Wignall, R. N. Compton and G. Bakale, The Journal of Chemical Physics, Vol. 111, 1999, pp. 4724-4728. http://dx.doi.org/10.1063/1.479234
[28] H. E. Smorenburg, R. M. Crevecoeur, I. M. de Schepper and L. A. de Graaf, Physical Review E, Vol. 52, 1995, pp. 2742-2752. http://dx.doi.org/10.1103/PhysRevE.52.2742
[29] F. Migliardo, V. Magazù and M. Migliardo, Journal of Molecular Liquids, Vol. 10, 2004, pp. 3-6.
http://dx.doi.org/10.1016/j.molliq.2003.08.010
[30] T. Tomiyama, S. Uchiyama and H. Shinohara, Chemical Physics Letters, Vol. 264, 1997, pp. 143-148.
http://dx.doi.org/10.1016/S0009-2614(96)01290-0
[31] A. D. Bokare and A. Patnaik, Journal of Chemical Physics, Vol. 119, 2003, pp. 4529-4538.
http://dx.doi.org/10.1063/1.1594177
[32] W. Smith and T. R. Forester, Journal of Molecular Graphics, Vol. 14, 1996, pp. 136-141.
http://dx.doi.org/10.1016/S0263-7855(96)00043-4
[33] W. Smith, T. R. Forester and I. T. Todorov, “The DL_POLY 2 User Manual,” STFC Daresbury Laboratory Daresbury, Warrington WA4 4AD Cheshire, UK, Version 2.19, 2008.
[34] Y. Kang, Y. C. Liu, Q. Wang, T. Wu and W. J. Guan, Biomaterials, Vol. 30, 2009, pp. 2807-2815.
http://dx.doi.org/10.1016/j.biomaterials.2009.01.024
[35] Y. H. Xie and A. K. Soh, Materials Letters, Vol. 59, 2005, pp. 971-975.
http://dx.doi.org/10.1016/j.matlet.2004.10.079
[36] D. S. D. Larsson, L. Liljas and D. van der Spoel, PLOS Computational Biology, Vol. 8, 2012, Article ID: e100 2502. http://dx.doi.org/10.1371/journal.pcbi.1002502
[37] B.-D. Chen, C.-L. Yang, M.-S. Wang and X.-G. Ma, Chinese Physics B, Vol. 21, 2012, Article ID: 083103.
[38] W. Humphrey, A. Dalke and K. Schulten, Journal of Molecular Graphics, Vol. 14, 1996, pp. 33-38.
http://dx.doi.org/10.1016/0263-7855(96)00018-5