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Biography
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Dr. Qian Zhu

Department of Health Sciences Research, Mayo Clinic, USA


Email: zhu.qian@mayo.edu


Qualifications

2000-2005  Ph.D., Chinese Academy of Sciences, China

1996-2000  B.Sc., SiChuan Normal University, China


Publications (selected)

  1. Zhu Q, Yao J, Li F, Chen H, Yuan S. A Novel Approach to Acquire Reaction Knowledge by Classification of Reaction Data. Acta Chimica Sinica. 2004; 62:112.
  2. Zhu Q, Yao J, Li F, Chen H, Yuan S. Comparison of the R-Group Similarity. Acta Chimica Sinica. 2004; 62:1585.
  3. Zhu Q, Yao J, Yuan S, Li F, Chen H, Cai W, Liao Q. Superstructure searching algorithm for generic reaction retrieval. J Chem Inf Model. 2005 Sep-Oct; 45(5):1214-22.
  4. Chen B, Dong X, Jiao D, Wang H, Zhu Q, Ding Y, Wild DJ. Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data. BMC Bioinformatics. 2010; 11:255. Epub 2010 May 17.
  5. Zhu Q, Lajiness MS, Ding Y, Wild DJ. WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications. J Cheminform. 2010; 2:6. Epub 2010 Aug 20.
  6. Chen B, Ding Y, Wang H, Wild DJ, Dong X, Sun Y, Zhu Q, Sankaranarayanan M. Chem2Bio2RDF: A Linked Open Data Portal for Systems Biology. Web Intelligence and Intelligent Agent Technology (WI-IAT), 2010 IEEE/WIC/ACM International Conference on. Sept 2010; 1:232-9.
  7. Zhu Q, Challa S, Purohit P, Sun Y, Lajiness MS, Wild DJ, Ding Y. Using Web Technologies for Integrative Drug Discovery. Web Intelligence and Intelligent Agent Technology (WI-IAT), 2010 IEEE/WIC/ACM International Conference on. Sept 2010; 1:188-91.
  8. Zhu Q, Sun Y, Challa S, Ding Y, Lajiness MS, Wild DJ. Semantic inference using chemogenomics data for drug discovery. BMC Bioinformatics. 2011; 12:256. Epub 2011 Jun 23.
  9. Pathak J, Weiss LC, Durski MJ, Zhu Q, Freimuth RR, Chute CG. Integrating va's ndf-rt drug terminology with pharmgkb: preliminary results. Pac Symp Biocomput. 2012; 400-9.
  10. Zhu Q, Jiang G, Chute CG. Profiling Structured Product Labeling Using NDF-RT and RxNorm. Accepted by ICBO 2012.
  11. Zhu Q, Freimuth RR, Lian Z, Bauer HS, Durski MJ, Tao C, Pathak J, Chute CG. Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: a case study. Submitted to Journal of Biomedical Informatics.
  12. Zhu Q,Freimuth RR, Pathak J, Durski MJ, Chute CG. Phenotype annotation for PharmGKB drug-disease relations with NDF-RT and SPL. Submitted to Journal of Biomedical Informatics.
  13. Zhu Q, Ding Y, Chute CG, Tao C. Time-related question answering for the case studies from the pharmacogenomics research network. Submitted to Journal of Medical Systems.

Refereed Conference Publications

  1. Zhu Q, Pierce ME, Fox GC, Lajiness M, Wild DJ. Integrative Data Mining for Drug Discovery Using the Semantic Web (Abstract). Microsoft eScience Workshop 2009, Pittsburgh, Pennsylvania.
  2. Challa S, Wild DJ, Ding Y, Zhu Q. Semantic Rules on Drug Discovery Data (Abstract). Fourth Asian Conference, ASWC 2009 Shanghai, People's Republic of China.
  3. Chen B, Ding Y, Dong X, Jiao D, Wang H, Zhu Q. Chem2Bio2RDF: Semantic Systems Chemical Biology (Abstract). American Chemical Society 239th National Meeting. San Francisco, California.
  4. Zhu Q, Lajiness M, Wild DJ. Using Aggregative Web Services for Drug Discovery (Abstract). American Chemical Society 239th National Meeting. San Francisco, California.
  5. Zhu Q, Lajiness M, Wild DJ.Mining and Visualizing Chemical Compound-Specific Chemical-Gene/Disease/Pathway/Literature Relationships (Abstract). American Chemical Society 240th National Meeting Boston, Massachusetts.
  6. Pandit Y, Zhu Q, Choi J, Bae SH, Qiu J, Wild DJ.Exploring Activity Cliffs using Large Scale Semantic Analysis of PubChem (Abstract). American Chemical Society 240th National Meeting. Boston, Massachusetts.
  7. Freimuth RR, Pathak J, Zhu Q, Sharma DK, Bauer HS, Lian ZH, Durski MJ, Chute CG. PGRN Ontology Network Resource (Abstract). AMIA 2011 Annual Symposium. 2011 Oct 24:1771.
  8. Zhu Q, Freimuth RR, Durski MJ, Pathak J, Chute CG. Standardization of Data Dictionaries: A Case Study from the Pharmacogenomics Research Network (Abstract). AMIA Summit on Clinical Research Informatics (CRI). San Francisco, CA. 2012 Mar.
  9. Zhu Q, Freimuth RR, Pathak J, Durski MJ, Lian Z, Bauer HS, Sharma DK, Chute CG. Development of infrastructure, data standards, and best practices for the curation of pharmacogenomics data (Abstract). The Fifth International Biocuration Conference. Georgetown University, Washington, DC. 2012 Apr.
  10. Zhu Q, Freimuth R, Lian Z, Bauer S, Durski M, Pathak J, Chute C. Pharmacogenomics Data Standardization using Clinical Element Models (CEMs) (Abstract) Proceedings of SHARP Area 4 F2F Meeting. June 11-12, 2012.

Book Chapters

Challa S, Wild D, Ding Y, Zhu Q. Semantic Rules on Drug Discovery Data In: The Semantic Web Vol. 5926. 2009. p. 362-4. (Lecture Notes in Computer Science).


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