Sanbo Qin

Dr. Sanbo Qin
Institute of Molecular Biophysics

Florida StateUniversity, USA


2001-2006 Ph.D., Institute of Biophysics, Chinese Academy of Science, China
B.Sc., College of life science, Sichuan University, China

Publications (Selected)

  1. Qin, S. & Zhou, H.-X. Structural Models of Protein-DNA Complexes Based on Interface Prediction and Docking. Current Protein & Peptide Science 12, 531-539 (2011).
  2. Qin, S., Pang, X. & Zhou, H.X. Automated prediction of protein association rate constants. Structure 19, 1744-1751 (2011).
  3. Pang, X., Qin, S. & Zhou, H.-X. Rationalizing 5000-Fold Differences in Receptor-Binding Rate Constants of Four Cytokines. Biophysical Journal 101, 1175-1183 (2011).
  4. Fleishman, S.J., et al. Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology. J Mol Biol  (2011).
  5. Qin, S. & Zhou, H.-X. Selection of near-native poses in CAPRI rounds 13-19. Proteins-Structure Function and Bioinformatics 78, 3166-3173 (2010).
  6. Qin, S. & Zhou, H.-X. Generalized fundamental measure theory for atomistic modeling of macromolecular crowding. Physical Review E 81 (2010).
  7. Qin, S., Minh, D.D.L., McCammon, J.A. & Zhou, H.-X. Method to Predict Crowding Effects by Postprocessing Molecular Dynamics Trajectories: Application to the Flap Dynamics of HIV-1 Protease. Journal of Physical Chemistry Letters 1, 107-110 (2010).
  8. Dong, H., Qin, S. & Zhou, H.-X. Effects of Macromolecular Crowding on Protein Conformational Changes. Plos Computational Biology 6 (2010).
  9. Qin, S. & Zhou, H.-X. Dissection of the high rate constant for the binding of a ribotoxin to the ribosome. Proceedings of the NationalAcademy of Sciences of the United States of America 106, 6974-6979 (2009).
  10. Qin, S. & Zhou, H.-X. Atomistic Modeling of Macromolecular Crowding Predicts Modest Increases in Protein Folding and Binding Stability. Biophysical Journal 97, 12-19 (2009).
  11. Batra, J., Xu, K., Qin, S. & Zhou, H.-X. Effect of Macromolecular Crowding on Protein Binding Stability: Modest Stabilization and Significant Biological Consequences. Biophysical Journal 97, 906-911 (2009).
  12. Qin, S. & Zhou, H.-X. Prediction of salt and mutational effects on the association rate of U1A protein and U1 small nuclear RNA stem/loop II. Journal of Physical Chemistry B 112, 5955-5960 (2008).
  13. He, Y., Qin, S. & Pan, X.-M. A novel procedure for identification of the folding/unfolding patterns of dimeric proteins. Journal of Theoretical Biology 250, 461-467 (2008).
  14. Zhou, H.-X. & Qin, S. Interaction-site prediction for protein complexes: a critical assessment. Bioinformatics 23, 2203-2209 (2007).
  15. Tjong, H., Qin, S. & Zhou, H.-X. (PIPE)-P-2: protein interface/interior prediction engine. Nucleic Acids Research 35, W357-W362 (2007).
  16. Qin, S. & Zhou, H.-X. meta-PPISP: a meta web server for protein-protein interaction site prediction. Bioinformatics 23, 3386-3387 (2007).
  17. Qin, S. & Zhou, H.-X. Do electrostatic interactions destabilize protein-nucleic acid binding? Biopolymers 86, 112-118 (2007).
  18. Qin, S. & Zhou, H.-X. A holistic approach to protein docking. Proteins-Structure Function and Bioinformatics 69, 743-749 (2007).
  19. Tan, B., Qin, S., Chen, M.E., Cang, H.X. & Zhang, H.J. Ca2+ binding effects on the C2 domain conformation of human cytosolic phospholipase A(2). Protein and Peptide Letters 13, 91-94 (2006).
  20. Pang, Y., Li, X., Qin, S., Zhang, H. & Chen, J. Mechanism of inhibition of Ca+-transport activity of sarcoplasmic reticulum Ca2+-ATPase by anisodamine. Indian Journal of Biochemistry & Biophysics 43, 351-359 (2006).
  21. Zhang, W.H., Qin, S., Zhang, H.J. & Zhu, Z.Y. Sequential conformation changes of Chinese hamster ovary dihydrofolate reductase at its active sites. Protein and Peptide Letters 12, 483-486 (2005).
  22. Qin, S., He, Y. & Pan, X.M. Predicting protein secondary structure and solvent accessibility with an improved multiple linear regression method. Proteins-Structure Function and Bioinformatics 61, 473-480 (2005).
  23. Xu, S., Oin, S. & Pan, X.M. Thermal and conformational stability of Ssh10b protein from archaeon Sulfolobus shibattae. Biochemical Journal 382, 433-440 (2004).

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