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Biography

Prof. Cizhong Jiang

School of Life Sciences and Technology

Tongji University, China


Email: czjiang@tongji.edu.cn


Qualifications

2004 Ph.D., Genetics, Iowa State University, USA

1998 M.Sc., Genetics, Nankai University, China

1995 B.Sc., Microbiology, Nankai University, China


Publications (Selected)

  1. Shi J, Hu J, Zhou Q, Du Y, Jiang C. (2013) PEpiD: a Prostate Epigenetic Database in mammals. PLoS One, 8(5): e64289.
  2. Chen G, Shi X, Sun C, Li M, Zhou Q, Zhang C, Huang J, Qiu Y, Wen X, Zhang Y, Zhang Y, Yang S, Lu L, Zhang J, Yuan Q, Lu J, Xu G, Xue Y, Jin Z, Jiang C#, Ying M, Liu X. (2013) VEGF-mediated proliferation of human adipose tissue-derived stem cells. PLoS One, 8(10): e73673.
  3. Lin J, Chen G, Gu L, Shen Y, Zheng M, Zheng W, Hu X, Zhang X, Qiu Y, Liu X, Jiang C. (2014) Phylogenetic affinity of tree shrews to Glires is attributed to fast evolution rate. Mol. Phylogenet. Evol., 71:193-200.
  4. Yin R, Gu L, Li M, Jiang C#, Cao T, Zhang X. (2014) Gene Expression Profiling Analysis of Bisphenol A-induced Perturbation in Biological Processes in ER-negative HEK 293 Cells. PLoS One, 9(6): e98635.
  5. Shi J, Zheng M, Ye Y, Li M, Chen X, Hu X, Sun J, Zhang X, Jiang C. (2014) Drosophila Brahma complex remodels nucleosome organizations in multiple aspects. Nucleic Acids Res., 42(15):9730-9.
  6. Shen J, Jia W, Yu Y, Chen J, Cao X, Du Y, Zhang X, Zhu S, Chen W, Xi J, Wei T, Wang G, Yuan D, Duan T, Jiang C#, Kang J. (2014) Pwp1 Is Required for the Differentiation Potential of Mouse Embryonic Stem Cells through Regulating Stat3 Signaling. Stem Cells, 2014 Oct 21. doi: 10.1002/stem.1876.
  7. Tao Y, Zheng W, Jiang Y, Ding G, Hou X, Tang Y, Li Y, Gao S, Chang G, Zhang X, Liu W, Kou X, Wang H, Jiang C#, Gao S. (2014) Nucleosome organizations in induced pluripotent stem cells reprogrammed from somatic cells belonging to three different germ layers. BMC Biol., 2014 Dec 21; 12(1):109.
  8. Tang Y, Dong S, Cao X, Zhou Q, Ding G, Jiang C. (2013) H2A. Z Nucleosome Positioning Has No Impact on Genetic Variation in Drosophila Genome. PLoS One, 8(3): e58295.
  9. Chang GS, Noegel AA, Mavrich TN, Müller R, Tomsho L, Ward E, Felder M, Jiang C, Eichinger L, Glöckner G, Schuster SC, Pugh BF. (2012) Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium. Genome Res, 22(6):1098-106.
  10. Venters BJ, Wachi S, Mavrich TN, Andersen BE, Jena P, Sinnamon AJ, Jain P, Rolleri NS, Jiang C, Hemeryck-Walsh C, Pugh BF. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell. 41(4):480-92.
  11. Zhao, Z and Jiang, C. (2010) Features of Recent Codon Evolution: A Comparative Polymorphism-Fixation Study. Journal of Biomedicine and Biotechnology. Volume 2010(2010), Article ID 202918, 9 pages, doi:10.1155/2010/202918.
  12. Koerber RT, Rhee HS, Jiang C, Pugh BF. (2009) Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome. Mol Cell. 35(6):889-902.
  13. Jiang, Cand Pugh BF. (2009) A compiled and systematic reference map of nucleosome positions across the Saccharomycesgenome. Genome Biology, 10: R109.
  14. Jiang, Cand Pugh BF. (2009) Nucleosome positioning and gene regulation: advances through genomics. Nature Reviews Genetics, 10(3): 161-72 Cover Story.
  15. Mavrich TN, Jiang C(Co-first author), Ioshikhes IP, Li X, Venters BJ, Zanton SJ, Tomsho LP, Qi J, Glaser RL, Schuster SC, Gilmour DS, Albert I, Pugh BF. (2008) Nucleosome organization in the Drosophilagenome. Nature, 453(7193):358-62.
  16. Mavrich, TN, Ioshikhes, IP, Venters, BJ, Jiang, C, Tomsho, LP, Qi, J, Schuster, SC, Albert, I, and Pugh, BF (2008) A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome.Genome Research, 18(7):1073-83.
  17. Albert I, Wachi S, Jiang C, Pugh BF. (2008) Gene Track-a genomic data processing and visualization framework. Bioinformatics. 24(10): 1305-6.
  18. Lee C, Li X, Hechmer A, Eisen M, Biggin MD, Venters BJ, Jiang C, Li J, Pugh BF, Gilmour DS.(2008)NELF and GAGA factor are linked to promoter proximal pausing at many genes in Drosophila. Mol Cell Biol. 28(10): 3290-300.
  19. Kuo PH, Kalsi G, Prescott CA, Hodgkinson CA, Goldman D, van den Oord EJ, Alexander J, Jiang C, Sullivan PF, Patterson DG, Walsh D, Kendler KS, Riley BP. (2008) Association of ADH and ALDH Genes with Alcohol Dependence in the Irish Affected Sib Pair Study of Alcohol Dependence (IASPSAD) Sample.Alcoholism: Clinical and Experimental Research. 32(5): 785-95.
  20. Zhao, Z and Jiang, C (2007) Methylation-Dependent Transition Rates Are Dependent on Local Sequence Lengths and Genomic Regions. Mol Biol Evol., 24(1): 23-5.
  21. Jiang, C, Han, L, Su, B, Li, WH and Zhao, Z (2007) Features and Trend of Loss of Promoter-Associated CpG Islands in the Human and Mouse Genomes. Mol Biol Evol. 24(9): 1991-2000.
  22. Jiang, C, Xuan, Z, Zhao, F, and Zhang, MQ (2007) TRED: a Transcriptional Regulatory Element Database, new entries and other development. Nucleic Acids Res., 35: D137-D140.
  23. Jiang, Cand Zhao, Z (2006) Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome. BMC Genomics, 7(1): 316.
  24. Jiang, Cand Zhao, Z (2006) Mutational spectrum in the recent human genome inferred by single nucleotide polymorphisms. Genomics, 88(5): 527-34.
  25. Seo, D, Jiang, C and Zhao, Z (2006) A novel statistical method to estimate the effective SNP size in vertebrate genomes and categorized genomic regions. BMC Genomics, 7(1): 329.
  26. Boddu, J, Jiang C, Sangar, V, Olson, T, Peterson, T, and Chopra, S (2006) Comparative structural and functional characterization of sorghum and maize duplications containing orthologous Myb transcription regulators of 3-deoxyflavonoid biosynthesis. Plant Molecular Biology, 60(2): 185-99.
  27. Jiang C, Gu, X, and Peterson, T (2004) Identification of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsisand Oryza sativaL. ssp. indica. Genome Biology, 5(7): R46.
  28. Jiang C, Gu, J, Chopra , S, Gu, X, and Peterson, T (2004) Ordered Origin of the Typical Two- and Three-Repeat Myb Genes. Gene, 326: 13-22.
  29. Jiang C, Song, W-Q, Li, X-L, Chen, R-Y(1998) Studies on microdissection and microcloning of the rye chromosome 1R. Acta Botanica Sinica, 40(11): 988-993.